5XM2

Human N-terminal domain of FACT complex subunit SPT16


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structural basis of human Spt16 N-terminal domain interaction with histone (H3-H4)2tetramer.

Jiang, H.Xu, S.Chen, Y.Li, H.Tian, L.Zhou, H.Zhao, Z.Yang, C.Zhong, Z.Cai, G.Su, D.

(2019) Biochem Biophys Res Commun 508: 864-870

  • DOI: https://doi.org/10.1016/j.bbrc.2018.11.150
  • Primary Citation of Related Structures:  
    5XM2

  • PubMed Abstract: 

    FACT (Facilitates Chromatin Transactions) is a heterodimeric protein complex involved in RNA polymerase II transcription elongation, playing essential roles in chromatin remodeling during transcription, replication, and DNA damage repair. The FACT subunit hSpt16 is essential for nucleosome reorganization. The N-terminal domain of hSpt16 (hSpt16-NTD) was recently described as a histone (H3-H4) 2 -binding domain; however, its mode of interaction remains unknown. In this study, we solved the structure of hSpt16-NTD 437 at 2.19 Å and found that a long-disordered region (hSpt16-LDR), after the main body of hSpt16-NTD, is a novel histone-binding motif. Furthermore, hSpt16-LDR interaction with (H3-H4) 2 is H3 N-terminal tail-independent. Therefore, Spt16-NTD is a histone H3-H4-specific binding domain with a distinct mechanism of interaction between histones and histone chaperones.


  • Organizational Affiliation

    State Key Lab of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, 610041, PR China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FACT complex subunit SPT16
A, B
437Homo sapiensMutation(s): 0 
Gene Names: SUPT16HFACT140FACTP140
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y5B9 (Homo sapiens)
Explore Q9Y5B9 
Go to UniProtKB:  Q9Y5B9
PHAROS:  Q9Y5B9
GTEx:  ENSG00000092201 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y5B9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.169 
  • Space Group: F 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 247.983α = 90
b = 247.983β = 90
c = 247.983γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data processing
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation of ChinaChina31370735
National Science Foundation of ChinaChina3167040397
Key Technology Research and Development Program of Sichuan ProvinceChina2014KJT021-2014SZ
Key Technology Research and Development Program of Sichuan ProvinceChina2015JQO029
National Key Research and Development Program of ChinaChina2017YFA0505900

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-16
    Type: Initial release
  • Version 1.1: 2019-11-27
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references