5X57

Structure of GAR domain of ACF7


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.126 
  • R-Value Observed: 0.130 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

ACF7 regulates inflammatory colitis and intestinal wound response by orchestrating tight junction dynamics.

Ma, Y.Yue, J.Zhang, Y.Shi, C.Odenwald, M.Liang, W.G.Wei, Q.Goel, A.Gou, X.Zhang, J.Chen, S.Y.Tang, W.J.Turner, J.R.Yang, F.Liang, H.Qin, H.Wu, X.

(2017) Nat Commun 8: 15375-15375

  • DOI: https://doi.org/10.1038/ncomms15375
  • Primary Citation of Related Structures:  
    5X57

  • PubMed Abstract: 

    In the intestinal epithelium, the aberrant regulation of cell/cell junctions leads to intestinal barrier defects, which may promote the onset and enhance the severity of inflammatory bowel disease (IBD). However, it remains unclear how the coordinated behaviour of cytoskeletal network may contribute to cell junctional dynamics. In this report, we identified ACF7, a crosslinker of microtubules and F-actin, as an essential player in this process. Loss of ACF7 leads to aberrant microtubule organization, tight junction stabilization and impaired wound closure in vitro. With the mouse genetics approach, we show that ablation of ACF7 inhibits intestinal wound healing and greatly increases susceptibility to experimental colitis in mice. ACF7 level is also correlated with development and progression of ulcerative colitis (UC) in human patients. Together, our results reveal an important molecular mechanism whereby coordinated cytoskeletal dynamics contributes to cell adhesion regulation during intestinal wound repair and the development of IBD.


  • Organizational Affiliation

    Department of GI surgery, Shanghai Tenth People's Hospital Affiliated with Tongji University, 301 Yanchang Road, Shanghai 200072, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Microtubule-actin cross-linking factor 1, isoforms 1/2/3/581Homo sapiensMutation(s): 0 
Gene Names: MACF1ABP620ACF7KIAA0465KIAA1251
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UPN3 (Homo sapiens)
Explore Q9UPN3 
Go to UniProtKB:  Q9UPN3
PHAROS:  Q9UPN3
GTEx:  ENSG00000127603 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UPN3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NI
Query on NI

Download Ideal Coordinates CCD File 
B [auth A]NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.126 
  • R-Value Observed: 0.130 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.04α = 90
b = 45.99β = 90
c = 25.62γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-05
    Type: Initial release
  • Version 1.1: 2017-09-06
    Changes: Database references, Source and taxonomy, Structure summary
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references