5WLO

a novel 13-ring macrocyclic HIV-1 protease inhibitors involving the P1'-P2' ligands


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 5WLO

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 22463.50

Macromolecule Entities
Molecule Chains Length Organism Details
Protease A, B 99 Human immunodeficiency virus 1 Mutation: Q7K, L33I, L63I, C67A, C95A
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GR7
Query on GR7

B (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3- yl {(2S,3R)-3-hydroxy-4-[(7E)-13-methoxy- 1,1-dioxo-1,4,5,6,9,11-hexahydro-10,1lambda~6~,2- benzoxathiazacyclotridecin-2(3H)-yl]-1-phenylbutan- 2-yl}carbamate
C32 H42 N2 O9 S
QVQZOHIOYHJWJV-RSNMJCISSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.159
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 58.47 α = 90.00
b = 86.03 β = 90.00
c = 45.88 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-27
  • Released Date: 2017-10-11
  • Deposition author(s): Wang, Y.-F., Agniswamy, J., Weber, I.T.

Revision History

  • Version 1_0: 2017-10-11

    Type: Initial release

  • Version 1_1: 2017-10-18

    Type: Author supporting evidence