5LSD

recombinant mouse Nerve Growth Factor


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational Rigidity within Plasticity Promotes Differential Target Recognition of Nerve Growth Factor.

Paoletti, F.de Chiara, C.Kelly, G.Covaceuszach, S.Malerba, F.Yan, R.Lamba, D.Cattaneo, A.Pastore, A.

(2016) Front Mol Biosci 3: 83-83

  • DOI: https://doi.org/10.3389/fmolb.2016.00083
  • Primary Citation of Related Structures:  
    5LSD

  • PubMed Abstract: 

    Nerve Growth Factor (NGF), the prototype of the neurotrophin family, is essential for maintenance and growth of different neuronal populations. The X-ray crystal structure of NGF has been known since the early '90s and shows a β-sandwich fold with extensive loops that are involved in the interaction with its binding partners. Understanding the dynamical properties of these loops is thus important for molecular recognition. We present here a combined solution NMR/molecular dynamics study which addresses the question of whether and how much the long loops of NGF are flexible and describes the N-terminal intrinsic conformational tendency of the unbound NGF molecule. NMR titration experiments allowed identification of a previously undetected epitope of the anti-NGF antagonist antibody αD11 which will be of crucial importance for future drug lead discovery. The present study thus recapitulates all the available structural information and unveils the conformational versatility of the relatively rigid NGF loops upon functional ligand binding.


  • Organizational Affiliation

    Neurotrophic Factors and Neurodegenerative Diseases Unit, European Brain Research, Rita Levi-Montalcini FoundationRome, Italy; Scuola Normale SuperiorePisa, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-nerve growth factor
A, B
118Mus musculusMutation(s): 0 
Gene Names: NgfNgfb
UniProt
Find proteins for P01139 (Mus musculus)
Explore P01139 
Go to UniProtKB:  P01139
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01139
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Community Seventh Framework ProgramItalyPaincage Grant number 603191
MIURItalyPRIN #2010N8PBAA_006

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-05
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other