5JNO

Crystal structure of the BD1-NTPR complex from BEND3 and PICH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.222 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the BD1-NTPR complex from BEND3 and PICH

Pitchai, G.Mesa, P.Hickson, I.D.Montoya, G.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BEN domain-containing protein 3112Homo sapiensMutation(s): 0 
Gene Names: BEND3KIAA1553
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T5X7 (Homo sapiens)
Explore Q5T5X7 
Go to UniProtKB:  Q5T5X7
PHAROS:  Q5T5X7
GTEx:  ENSG00000178409 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5T5X7
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA excision repair protein ERCC-6-like57Homo sapiensMutation(s): 0 
Gene Names: ERCC6LPICH
EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q2NKX8 (Homo sapiens)
Explore Q2NKX8 
Go to UniProtKB:  Q2NKX8
PHAROS:  Q2NKX8
GTEx:  ENSG00000186871 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2NKX8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
C [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.222 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.28α = 90
b = 47.28β = 90
c = 431.579γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
SHELXDEphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmark14cc0001

Revision History  (Full details and data files)

  • Version 1.0: 2017-09-13
    Type: Initial release
  • Version 1.1: 2019-10-16
    Changes: Data collection
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references