Download MendeleyCrystal structure of the intertwined form of the Src tyrosine kinase SH3 domain T114S-Q128R mutant
Camara-Artigas, A.To be published.
5I11
Crystal structure of the intertwined form of the Src tyrosine kinase SH3 domain T114S-Q128R mutant
- PDB DOI: https://doi.org/10.2210/pdb5I11/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Gallus gallus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2016-02-05 Released: 2016-03-09
- Funding Organization(s): Junta de Andalucia, Spanish Ministry of Economy and Competitiveness
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.218
- R-Value Work: 0.187
- R-Value Observed: 0.189
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Proto-oncogene tyrosine-protein kinase Src | 61 | Gallus gallus | Mutation(s): 2 Gene Names: SRC EC: 2.7.10.2 |  | |
UniProt | |||||
Find proteins for P00523 (Gallus gallus) Explore P00523 Go to UniProtKB: P00523 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00523 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | B [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | D [auth A], E [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACT Query on ACT | F [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.218
- R-Value Work: 0.187
- R-Value Observed: 0.189
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.735 | α = 90 |
| b = 46.735 | β = 90 |
| c = 127.907 | γ = 120 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-03-09 Deposition Author(s): Camara-Artigas, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Junta de Andalucia | Spain | P09-CVI-5063 |
| Spanish Ministry of Economy and Competitiveness | Spain | BIO2012-39922-C02-02 |
Revision History (Full details and data files)
- Version 1.0: 2016-03-09
Type: Initial release - Version 1.1: 2017-09-06
Changes: Author supporting evidence - Version 1.2: 2024-01-10
Changes: Data collection, Database references, Refinement description
