5DWR

Identification of N-(4-((1R,3S,5S)-3-amino-5-methylcyclohexyl)pyridin-3-yl)-6-(2,6-difluorophenyl)-5-fluoropicolinamide (PIM447), a Potent and Selective Proviral Insertion Site of Moloney Murine Leukemia (PIM) 1,2 and 3 Kinase Inhibitor in Clinical Trials for Hematological Malignancies


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 5DWR

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 38037.16

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 328 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 93-404
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5H7
Query on 5H7

A N-{4-[(1R,3S,5S)-3-amino-5-methylcyclohexyl]pyridin- 3-yl}-6-(2,6-difluorophenyl)-5-fluoropyridine- 2-carboxamide
C24 H23 F3 N4 O
VRQXRVAKPDCRCI-ZNMIVQPWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.173
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 98.23 α = 90.00
b = 98.23 β = 90.00
c = 81.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-22
  • Released Date: 2015-11-11
  • Deposition author(s): Bellamacina, C., Bussiere, D., Burger, M.

Revision History

  • 2015-11-25
    Type: Database references