5DGZ

Discovery of 3,5-substituted 6-azaindazoles as potent pan-Pim inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 5DGZ

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 35034.55

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 299 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: kinase domain (UNP residues 120-404)
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L20
Query on L20

A (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H- INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE
C24 H23 N5 O
YWTBGJGMTBHQTM-IBGZPJMESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.180
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 98.40 α = 90.00
b = 98.40 β = 90.00
c = 80.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-29
  • Released Date: 2015-10-28
  • Deposition author(s): Murray, J.M., Wallweber, H., Steffek, M.

Revision History

  • 2015-11-11
    Type: Database references