5U8C

CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH GLYCINE AND NVP-AAM077


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 5U8C

Classification: TRANSPORT PROTEIN

Total Structure Weight: 65746.70

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate receptor ionotropic, NMDA 1 A 292 Rattus norvegicus Fragment: UNP residues 394-554, 663-800
Gene Name(s): Grin1 Nmdar1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A B 283 Rattus norvegicus Gene Name(s): Grin2a
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
84J
Query on 84J

B [(R)-{[(1S)-1-(4-bromophenyl)ethyl]amino}(2,3- dihydroxyquinoxalin-5-yl)methyl]phosphonic acid
C17 H17 Br N3 O5 P
XXZGNAZRWCBSBK-HUTHGQBESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLY
Query on GLY

A GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.189
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.55 α = 90.00
b = 84.23 β = 90.00
c = 121.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-14
  • Released Date: 2017-05-17
  • Deposition author(s): Romero-Hernandez, A., Furukawa, H.

Revision History

  • 2017-06-07
    Type: Database references, Other