Macromolecules
Sequence Display for 5K78

Classification: HYDROLASE / RNA

Total Structure Weight: 221826.34


Macromolecule Entities
Molecule Chains Length Organism Details
RNA lariat debranching enzyme, putative A, B, C, D, E 360 Entamoeba histolytica Mutation: H91A
Gene Name(s): EHI_062730
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
branch 1 of branched RNA 5'-UACUAA(2'-GUAUGU)CAAGU-3' X, Y 11 Saccharomyces cerevisiae This is a branched RNA 5'-UACUAA(2'-GUAUG)CAAGU-3'
branch 2 of branched RNA 5'-UACUAA(2'-GUAUGU)CAAGU-3' x, y 6 Saccharomyces cerevisiae This is a branched RNA 5'-UACUAA(2'-GUAUG)CAAGU-3'

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, B, C, D, E FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.195
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.89 α = 90.00
b = 142.67 β = 90.00
c = 215.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-25
  • Released Date: 2016-12-07
  • Deposition author(s): Clark, N.E., Taylor, A.B., Hart, P.J.

Revision History

  • 2016-12-14
    Type: Derived calculations