5IA2

Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with compound 66


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 5IA2

Classification: TRANSFERASE

Total Structure Weight: 35066.46

Macromolecule Entities
Molecule Chains Length Organism Details
Ephrin type-A receptor 2 A 306 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: UNP residues 596-900
Details: Ligand ID L66: compound/ligand 66 EDO from cryo soaking
Gene Name(s): EPHA2 Gene View ECK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L66
Query on L66

A 7-(5-hydroxy-2-methylphenyl)-8-(2-methoxyphenyl)- 1-methyl-1H-imidazo[2,1-f]purine-2,4(3H,8H)- dione
C22 H19 N5 O4
JTWMOWRMSZZHDR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.162
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 32.86 α = 90.00
b = 107.52 β = 108.84
c = 40.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-21
  • Released Date: 2016-11-09
  • Deposition author(s): KUDLINZKI, D., LINHARD, V.L., GANDE, S.L., SREERAMULU, S., SAXENA, K., HEINZLMEIR, S., MEDARD, G., KUESTER, B., SCHWALBE, H.

Revision History

  • Version 1_0: 2016-11-09

    Type: Initial release

  • Version 1_1: 2016-12-28

    Type: Database references