5F1R

The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (C10)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 5F1R

Classification: DNA BINDING PROTEIN

Total Structure Weight: 55413.70

Macromolecule Entities
Molecule Chains Length Organism Details
Listeriolysin regulatory protein A, B 237 Listeria monocytogenes Gene Name(s): prfA lmo0200
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
42O
Query on 42O

A, B (3~{R})-8-cyclopropyl-7-(naphthalen-1-ylmethyl)- 5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2- a]pyridine-3-carboxylic acid
C22 H19 N O3 S
BMDMKWJIRFLEEY-SFHVURJKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.198
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 56.34 α = 90.00
b = 80.97 β = 112.54
c = 62.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-30
  • Released Date: 2016-03-16
  • Deposition author(s): Begum, A., Grundstrom, C., Good, J.A.D., Andersson, C., ALmqvist, F., Johansson, J., Sauer, U.H., Sauer-Eriksson, A.E.

Revision History

  • Version 1_0: 2016-03-16

    Type: Initial release

  • Version 1_1: 2016-03-30

    Type: Database references

  • Version 1_2: 2017-09-13

    Type: Author supporting evidence