5E2G

Crystal Structure of D-alanine Carboxypeptidase AmpC from Burkholderia cenocepacia


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 5E2G

Classification: HYDROLASE

Total Structure Weight: 79789.09

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-lactamase A, B 361 Burkholderia cenocepacia EC#: 3.5.2.6 IUBMB
Fragment: residues 31-388
Gene Name(s): ampC BCAS0156
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACY
Query on ACY

A, B ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A, B THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.150
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 85.96 α = 90.00
b = 85.96 β = 90.00
c = 90.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-01
  • Released Date: 2015-10-14
  • Deposition author(s): Kim, Y., Joachimiak, G., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2015-10-14

    Type: Initial release