5DVX

Crystal structure of the catalytic-domain of human carbonic anhydrase IX at 1.6 angstrom resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 5DVX

Classification: LYASE

Total Structure Weight: 58084.79

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 9 A, B 260 Homo sapiens EC#: 4.2.1.1 IUBMB
Fragment: catalytic-domain (UNP residues 140-399)
Mutation: C174S, L183S, A213K, A258K, F259Y, M350S
Gene Name(s): CA9 Gene View G250 MN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.168
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.88 α = 90.00
b = 102.74 β = 90.00
c = 108.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-21
  • Released Date: 2016-08-03
  • Deposition author(s): Mahon, B.P., Socorro, L., Driscoll, J.M., McKenna, R.

Revision History

  • Version 1_0: 2016-08-03

    Type: Initial release

  • Version 1_1: 2016-08-17

    Type: Database references

  • Version 1_2: 2016-09-07

    Type: Database references

  • Version 1_3: 2017-09-27

    Type: Author supporting evidence, Database references, Derived calculations