5D7E

Crystal structure of Taf14 YEATS domain in complex with H3K9ac


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Association of Taf14 with acetylated histone H3 directs gene transcription and the DNA damage response.

Shanle, E.K.Andrews, F.H.Meriesh, H.McDaniel, S.L.Dronamraju, R.DiFiore, J.V.Jha, D.Wozniak, G.G.Bridgers, J.B.Kerschner, J.L.Krajewski, K.Martin, G.M.Morrison, A.J.Kutateladze, T.G.Strahl, B.D.

(2015) Genes Dev 29: 1795-1800

  • DOI: https://doi.org/10.1101/gad.269977.115
  • Primary Citation of Related Structures:  
    5D7E

  • PubMed Abstract: 

    The YEATS domain, found in a number of chromatin-associated proteins, has recently been shown to have the capacity to bind histone lysine acetylation. Here, we show that the YEATS domain of Taf14, a member of key transcriptional and chromatin-modifying complexes in yeast, is a selective reader of histone H3 Lys9 acetylation (H3K9ac). Structural analysis reveals that acetylated Lys9 is sandwiched in an aromatic cage formed by F62 and W81. Disruption of this binding in cells impairs gene transcription and the DNA damage response. Our findings establish a highly conserved acetyllysine reader function for the YEATS domain protein family and highlight the significance of this interaction for Taf14.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, The University of North Carolina School of Medicine, Chapel Hill, North Carolina 27599 USA;


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription initiation factor TFIID subunit 14140Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TAF14ANC1CST10SWP29TAF30TFG3YPL129W
UniProt
Find proteins for P35189 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P35189 
Go to UniProtKB:  P35189
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35189
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
H3K9acB [auth C]8Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P61830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P61830 
Go to UniProtKB:  P61830
Entity Groups  
UniProt GroupP61830
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
ALY
Query on ALY
B [auth C]L-PEPTIDE LINKINGC8 H16 N2 O3LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.164α = 90
b = 113.164β = 90
c = 26.524γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
d*TREKdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM110058
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM100907
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesK12-GM000678
National Institutes of Health/National Institute on Alcohol Abuse and Alcoholism (NIH/NIAAA)United StatesT32AA007464

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-23
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Author supporting evidence, Database references, Derived calculations
  • Version 1.2: 2019-12-11
    Changes: Author supporting evidence