4ZVM

Oxidized quinone reductase 2 in complex with doxorubicin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 4ZVM

Classification: oxidoreductase / oxidoreductase inhibitor

Total Structure Weight: 54487.63

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosyldihydronicotinamide dehydrogenase [quinone] A, B 230 Homo sapiens EC#: 1.10.5.1 IUBMB
Mutation: L46F
Gene Name(s): NQO2 Gene View NMOR2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DM2
Query on DM2

A, B DOXORUBICIN
ADRIAMYCIN (Synonym)
C27 H29 N O11
AOJJSUZBOXZQNB-TZSSRYMLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.169
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.23 α = 90.00
b = 83.34 β = 90.00
c = 106.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-05-18
  • Released Date: 2016-03-30
  • Deposition author(s): Leung, K.K., Shilton, B.H.

Revision History

  • 2016-06-08
    Type: Database references