4WT6

Crystal structure of human Pim-1 kinase in complex with a thiadiazolamine-indole inhibitor.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 4WT6

Classification: transferase / transferase inhibitor

Total Structure Weight: 33532.99

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 286 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: unp residues 124-396
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3U6
Query on 3U6

A 6-[5-(5-amino-1,3,4-thiadiazol-2-yl)-1H-indol- 3-yl]-N-cyclopentylpyridin-2-amine
C20 H20 N6 S
LYSVYDGAEVIKAF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3U6 IC50: 12 - 111 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.176
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 98.18 α = 90.00
b = 98.18 β = 90.00
c = 80.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-10-29
  • Released Date: 2015-02-11
  • Deposition author(s): Mohr, C.

Revision History

No revisions since initial release