4WRS

Crystal structure of human Pim-1 kinase in complex with an azaspiro pyrazinyl-indazole inhibitor.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 4WRS

Classification: transferase / transferase inhibitor

Total Structure Weight: 33682.06

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 286 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: unp residues 124-396
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3U1
Query on 3U1

A 3-{6-[(4R)-6-azaspiro[2.5]oct-4-yloxy]pyrazin- 2-yl}-5-(2,6-difluorophenyl)-1H-indazole
C24 H21 F2 N5 O
FCGLYPSBPNFQRF-FQEVSTJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.179
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.82 α = 90.00
b = 97.82 β = 90.00
c = 80.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-10-25
  • Released Date: 2015-02-04
  • Deposition author(s): Mohr, C.

Revision History

  • 2015-02-11
    Type: Database references