4TY1

Crystal structure of human Pim-1 kinase in complex with an aminooxadiazole-indole inhibitor.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 4TY1

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 33530.95

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 286 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 124-396
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
38W
Query on 38W

A N-tert-butyl-5-[3-(4-cyclopropylpyrimidin- 2-yl)-1H-indol-5-yl]-1,3,4-oxadiazol-2-amine
C21 H22 N6 O
BQKBRLMFCCUJQA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.181
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 95.08 α = 90.00
b = 95.08 β = 90.00
c = 80.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-07-07
  • Released Date: 2015-02-04
  • Deposition author(s): Mohr, C.

Revision History

  • 2015-02-18
    Type: Database references