4NAD

Crystal Structure of the C-terminal Domain of CREPT

PDB DOI: https://doi.org/10.2210/pdb4NAD/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-10-22 Released: 2013-12-11
Deposition Author(s): Mei, K., Jin, Z., Ren, F., Wang, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.290
R-Value Work: 0.237
R-Value Observed: 0.240

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of the C-terminal Domain of CREPT

Mei, K., Jin, Z., Ren, F., Wang, Y., Chang, Z., Wang, X.

To be published.

Macromolecule Content

Total Structure Weight: 34.17 kDa
Atom Count: 2,104
Modelled Residue Count: 266
Deposited Residue Count: 308
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Regulation of nuclear pre-mRNA domain-containing protein 1B	A [auth B], B [auth A]	154	Homo sapiens	Mutation(s): 0 Gene Names: RPRD1B, C20orf77, CREPT
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQG5 (Homo sapiens) Explore Q9NQG5 Go to UniProtKB: Q9NQG5
PHAROS: Q9NQG5 GTEx: ENSG00000101413
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9NQG5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.290
R-Value Work: 0.237
R-Value Observed: 0.240
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.28	α = 90
b = 55.66	β = 92.9
c = 84.45	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-12-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-12-11
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.