4GQW

Crystal structure of CBS-pair protein, CBSX1 (loop deletion) from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.263 

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Literature

Crystal structure of CBSX1 (loop deletion)

Jeong, B.C.Park, S.H.Yoo, K.S.Shin, J.S.Song, H.K.

(2012) Biochem Biophys Res Commun 

  • DOI: https://doi.org/10.1016/j.bbrc.2012.10.139
  • Primary Citation of Related Structures:  
    4GQV, 4GQW

  • PubMed Abstract: 

    The single cystathionine β-synthase (CBS) pair proteins from Arabidopsis thaliana have been identified as being a redox regulator of the thioredoxin (Trx) system. CBSX1 and CBSX2, which are two of the six Arabidopsis cystathione β-synthase domain-containing proteins that contain only a single CBS pair, have close sequence similarity. Recently, the crystal structure of CBSX2 was determined and a significant portion of the internal region was disordered. In this study, crystal structures of full-length CBSX1 and the internal loop deleted (Δloop) form are reported at resolutions of 2.4 and 2.2Å, respectively. The structures of CBSX1 show that they form anti-parallel dimers along their central twofold axis and have a unique ∼155° bend along the side. This is different from the angle of CBSX2, which is suggestive of the flexible nature of the relative angle between the monomers. The biochemical data that were obtained using the deletion as well as point mutants of CBSX1 confirmed the importance of AMP-ligand binding in terms of enhancing Trx activity.


  • Organizational Affiliation

    School of Life Sciences and Biotechnology, Korea University, Seoul 136-701, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CBS domain-containing protein CBSX1, chloroplastic152Arabidopsis thalianaMutation(s): 0 
Gene Names: AP22.61At4g36910C7A10.450CBSX1CDCP2
UniProt
Find proteins for O23193 (Arabidopsis thaliana)
Explore O23193 
Go to UniProtKB:  O23193
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO23193
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.263 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.818α = 90
b = 55.818β = 90
c = 83.003γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
PHASESphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Data collection, Database references