4G0H

Crystal structure of the N-terminal domain of Helicobacter pylori CagA protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free: 0.341 
  • R-Value Work: 0.329 
  • R-Value Observed: 0.329 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural insights into Helicobacter pylori oncoprotein CagA interaction with beta 1 integrin.

Kaplan-Turkoz, B.Jimenez-Soto, L.F.Dian, C.Ertl, C.Remaut, H.Louche, A.Tosi, T.Haas, R.Terradot, L.

(2012) Proc Natl Acad Sci U S A 109: 14640-14645

  • DOI: https://doi.org/10.1073/pnas.1206098109
  • Primary Citation of Related Structures:  
    4G0H

  • PubMed Abstract: 

    Infection with the gastric pathogen Helicobacter pylori is a risk factor for the development of gastric cancer. Pathogenic strains of H. pylori carry a type IV secretion system (T4SS) responsible for the injection of the oncoprotein CagA into host cells. H. pylori and its cag-T4SS exploit α5β1 integrin as a receptor for CagA translocation. Injected CagA localizes to the inner leaflet of the host cell membrane, where it hijacks host cell signaling and induces cytoskeleton reorganization. Here we describe the crystal structure of the N-terminal ~100-kDa subdomain of CagA at 3.6 Å that unveils a unique combination of folds. The core domain of the protein consists of an extended single-layer β-sheet stabilized by two independent helical subdomains. The core is followed by a long helix that forms a four-helix helical bundle with the C-terminal domain. Mapping of conserved regions in a set of CagA sequences identified four conserved surface-exposed patches (CSP1-4), which represent putative hot-spots for protein-protein interactions. The proximal part of the single-layer β-sheet, covering CSP4, is involved in specific binding of CagA to the β1 integrin, as determined by yeast two-hybrid and in vivo competition assays in H. pylori cell-culture infection studies. These data provide a structural basis for the first step of CagA internalization into host cells and suggest that CagA uses a previously undescribed mechanism to bind β1 integrin to mediate its own translocation.


  • Organizational Affiliation

    Centre National de la Recherche Scientifique-Ligue Contre le Cancer, ATIP Avenir Group, Institut de Biologie et Chimie des Protéines, Unité Mixte de Recherche 5086, Université Lyon, Lyon F-69367, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytotoxicity-associated immunodominant antigen916Helicobacter pylori 26695Mutation(s): 0 
Gene Names: cag26cagAcaiHP0547HP_0547
UniProt
Find proteins for P55980 (Helicobacter pylori (strain ATCC 700392 / 26695))
Explore P55980 
Go to UniProtKB:  P55980
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP55980
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free: 0.341 
  • R-Value Work: 0.329 
  • R-Value Observed: 0.329 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.83α = 90
b = 97.83β = 90
c = 245.39γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-08-22
    Type: Initial release
  • Version 1.1: 2013-08-28
    Changes: Database references
  • Version 1.2: 2017-11-15
    Changes: Refinement description
  • Version 1.3: 2024-02-28
    Changes: Data collection, Database references