4FEY

An X-ray Structure of a Putative Phosphogylcerate Kinase with Bound ADP from Francisella tularensis subsp. tularensis SCHU S4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

An X-ray Structure of a Putative Phosphogylcerate Kinase with Bound ADP from Francisella tularensis subsp. tularensis SCHU S4

Brunzelle, J.S.Wawrzak, Z.Skarina, T.Anderson, W.F.Savchenko, A.Center for Structural Genomics of Infectious Diseases

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphoglycerate kinase395Francisella tularensis subsp. tularensis SCHU S4Mutation(s): 0 
Gene Names: FTT_1367cpgk
EC: 2.7.2.3
UniProt
Find proteins for Q5NF76 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4))
Explore Q5NF76 
Go to UniProtKB:  Q5NF76
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5NF76
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download Ideal Coordinates CCD File 
B [auth A]ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 
  • Space Group: I 41
  • Diffraction Data: https://doi.org/10.18430/m34fey
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.616α = 90
b = 66.616β = 90
c = 206.524γ = 90
Software Package:
Software NamePurpose
BLU-MAXdata collection
PHASERphasing
PHENIXmodel building
BUSTERrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-06-13
    Type: Initial release
  • Version 1.1: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description