4BZO

Crystal structure of PIM1 in complex with a Pyrrolo-Pyrazinone inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 4BZO

Classification: TRANSFERASE

Total Structure Weight: 36243.13

Macromolecule Entities
Molecule Chains Length Organism Details
SERINE/THREONINE-PROTEIN KINASE PIM-1 A 314 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 2-313
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
676
Query on 676

A N-[(1S)-2-AMINO-1-PHENYLETHYL]-2-[(4S)-7- (2-FLUORO-4-PYRIDINYL)-1-OXO-1,2,3,4-TETRAHYDROPYRROLO[1,2- A]PYRAZIN-4-YL]ACETAMIDE
C22 H22 F N5 O2
MCZCAWWHZGEUFE-ZWKOTPCHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
676 IC50: 13 nM (99) BindingDB

IC50: 13 nM  BindingMOAD
IC50: 13 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.181
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.93 α = 90.00
b = 97.93 β = 90.00
c = 81.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-29
  • Released Date: 2013-10-30
  • Deposition author(s): Casale, E., Casuscelli, F., Ardini, E., Avanzi, N., Cervi, G., D'Anello, M., Donati, D., Faiardi, D., Ferguson, R.D., Fogliatto, G., Galvani, A., Marsiglio, A., Mirizzi, D.G., Montemartini, M., Orrenius, C., Papeo, G., Piutti, C., Salom, B., Felder, E.R.

Revision History

  • 2013-11-13
    Type: Database references