4TKP

Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 4TKP

Classification: LIGASE

Total Structure Weight: 27773.56

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 N A 153 Homo sapiens EC#: 2.3.2.23 IUBMB
Gene Name(s): UBE2N Gene View BLU
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tripartite motif-containing protein 5 B 93 Macaca mulatta EC#: 6.3.2 IUBMB
Fragment: UNP residues 2-92
Gene Name(s): TRIM5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.224
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 78.17 α = 90.00
b = 78.17 β = 90.00
c = 82.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-27
  • Released Date: 2015-07-22
  • Deposition author(s): Johnson, R., Taylor, A.B., Hart, P.J., Ivanov, D.N.

Revision History

No revisions since initial release