4OVX

Crystal structure of Xylose isomerase domain protein from Planctomyces limnophilus DSM 3776


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4OVX

Classification: ISOMERASE

Total Structure Weight: 31214.08

Macromolecule Entities
Molecule Chains Length Organism Details
Xylose isomerase domain protein TIM barrel A 277 Planctopirus limnophila Fragment: UNP residues 37-313
Gene Name(s): Plim_2642
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.198
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 88.31 α = 90.00
b = 88.31 β = 90.00
c = 132.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-22
  • Released Date: 2014-02-12
  • Deposition author(s): Chang, C., Bigelow, L., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2014-02-12

    Type: Initial release

  • Version 1_1: 2015-02-04

    Type: Derived calculations

  • Version 1_2: 2017-11-22

    Type: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary