4NJ4

Crystal Structure of Human ALKBH5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 4NJ4

Classification: Oxidoreductase / Oxidoreductase inhibitor

Total Structure Weight: 58630.85

Macromolecule Entities
Molecule Chains Length Organism Details
RNA demethylase ALKBH5 A, B 250 Homo sapiens EC#: 1.14.11 IUBMB
Fragment: ALKBH5 residues 66-292
Gene Name(s): ALKBH5 Gene View ABH5 OFOXD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UN9
Query on UN9

A, B N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE
C12 H9 Cl N2 O4
OUQVKRKGTAUJQA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A, B NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.165
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.10 α = 90.00
b = 82.66 β = 90.00
c = 89.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-08
  • Released Date: 2014-01-15
  • Deposition author(s): Aik, W.S., McDonough, M.A., Schofield, C.J.

Revision History

  • 2014-05-14
    Type: Database references
  • 2014-05-21
    Type: Database references