4EAQ

Crystal structure of Thymidylate Kinase from Staphylococcus aureus in complex with 3'-Azido-3'-Deoxythymidine-5'-Monophosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 4EAQ

Classification: transferase / transferase inhibitor

Total Structure Weight: 53091.48

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidylate kinase A, B 229 Staphylococcus aureus EC#: 2.7.4.9 IUBMB
Gene Name(s): tmk SAV0482
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATM
Query on ATM

A, B 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
C10 H14 N5 O7 P
OIFWQOKDSPDILA-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 48.21 α = 90.00
b = 62.70 β = 97.84
c = 73.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-22
  • Released Date: 2012-04-11
  • Deposition author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Jedrzejczak, R., Babnigg, G., Rubin, E., Sacchettini, J., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MT

Revision History

  • Version 1_0: 2012-04-11

    Type: Initial release

  • Version 1_1: 2012-10-10

    Type: Structure summary

  • Version 1_2: 2017-11-15

    Type: Refinement description