3UIX

Crystal structure of Pim1 kinase in complex with small molecule inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 3UIX

Classification: TRANSFERASE / INHIBITOR

Total Structure Weight: 34781.22

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 298 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Protein kinase domain (UNP RESIDUES 120-404)
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
Q17
Query on Q17

A 2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
C17 H18 N4 O
VIQWLKJTZBWAFF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
Q17 N/A in BindingDB
IC50: 151 nM  BindingMOAD
IC50: 151 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.166
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.01 α = 90.00
b = 97.01 β = 90.00
c = 80.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-06
  • Released Date: 2012-04-11
  • Deposition author(s): Parker, L.J.

Revision History

No revisions since initial release