Download MendeleyStructural Basis of Type-I Interferon Sequestration by a Poxvirus Decoy Receptor
Fremont, D.H., Lee, C.A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
3OQ3
Structural Basis of Type-I Interferon Sequestration by a Poxvirus Decoy Receptor
- PDB DOI: https://doi.org/10.2210/pdb3OQ3/pdb
- Classification: CYTOKINE/VIRAL PROTEIN
- Organism(s): Mus musculus, Ectromelia virus Moscow
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-09-02 Released: 2011-05-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.235
- R-Value Work: 0.203
- R-Value Observed: 0.204
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Interferon alpha-5 | 166 | Mus musculus | Mutation(s): 0 Gene Names: Ifna5 |  | |
UniProt | |||||
Find proteins for P07349 (Mus musculus) Explore P07349 Go to UniProtKB: P07349 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07349 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| IFN-alpha/beta binding protein C12R | 329 | Ectromelia virus Moscow | Mutation(s): 0 Gene Names: C12R, EVM166 |  | |
UniProt | |||||
Find proteins for Q9JFS5 (Ectromelia virus) Explore Q9JFS5 Go to UniProtKB: Q9JFS5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9JFS5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | K [auth B], L [auth B] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A], F [auth A], I [auth B], J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth B], H [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.235
- R-Value Work: 0.203
- R-Value Observed: 0.204
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.84 | α = 90 |
| b = 75.9 | β = 90 |
| c = 182.73 | γ = 90 |
| Software Name | Purpose |
|---|---|
| d*TREK | data processing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| Blu-Ice | data collection |
| d*TREK | data reduction |
| d*TREK | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2011-05-18 Deposition Author(s): Fremont, D.H., Lee, C.A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2011-05-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
