3BWF

Crystal structure of the human Pim1 in complex with an osmium compound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3BWF

Classification: TRANSFERASE

Total Structure Weight: 36310.23

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase Pim-1 A 313 Homo sapiens EC#: 2.7.11.1 IUBMB
Mutation: R250G
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DWC
Query on DWC

A PYRIDOCARBAZOLE CYCLOPENTADIENYL OS(CO) COMPLEX
C23 H9 N3 O4 Os
PAWFNOQPRXIUSH-LZOTZQNHCM
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DWC N/A in BindingDB
IC50: 0.6 nM  BindingMOAD
IC50: 0.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.168
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 98.46 α = 90.00
b = 98.46 β = 90.00
c = 81.36 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-09
  • Released Date: 2008-06-24
  • Deposition author(s): Maksimoska, J., Filippakopoulos, P., Knapp, S., Meggers, E.

Revision History

  • Version 1_0: 2008-06-24

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance