3VVB

Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus aureus in apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 3VVB

Classification: LYASE

Total Structure Weight: 41699.93

Macromolecule Entities
Molecule Chains Length Organism Details
CapE A 363 Staphylococcus aureus EC#: 4.2.1.115 IUBMB
Gene Name(s): capE SAV0153
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.236
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 125.18 α = 90.00
b = 125.18 β = 90.00
c = 101.79 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-18
  • Released Date: 2013-06-12
  • Deposition author(s): Miyafusa, T., Caaveiro, J.M., Tanaka, Y., Tsumoto, K.

Revision History

  • Version 1_0: 2013-06-12

    Type: Initial release

  • Version 1_1: 2014-01-29

    Type: Database references