3VDH

Crystal structure of PbGH5A, a glycoside hydrolase family 5 enzyme from Prevotella bryantii B14


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 3VDH

Classification: HYDROLASE

Total Structure Weight: 80194.44

Macromolecule Entities
Molecule Chains Length Organism Details
B-1,4-endoglucanase A, B 353 Prevotella bryantii Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.151
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 57.91 α = 90.00
b = 85.25 β = 109.15
c = 74.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-05
  • Released Date: 2012-01-18
  • Deposition author(s): Stogios, P.J., Evdokimova, E., Egorova, O., Yim, V., Joachimiak, A., Edwards, A.M., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
  • This entry supercedes: 3L55

Revision History

  • Version 1_0: 2012-01-18

    Type: Initial release

  • Version 1_1: 2015-09-16

    Type: Other

  • Version 1_2: 2015-11-04

    Type: Database references

  • Version 1_3: 2015-12-23

    Type: Database references

  • Version 1_4: 2016-02-17

    Type: Database references

  • Version 1_5: 2016-06-22

    Type: Structure summary