3TT7

Structure of ClpP from Bacillus subtilis in complex with DFP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 3TT7

Classification: HYDROLASE

Total Structure Weight: 153111.94

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent Clp protease proteolytic subunit A, B, C..., D, E, F, GA, B, C, D, E, F, G 197 Bacillus subtilis EC#: 3.4.21.92 IUBMB
Gene Name(s): clpP yvdN BSU34540
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DFP
Query on DFP

A, B, C, D, E, F, G DIISOPROPYL PHOSPHONATE
C6 H15 O3 P
BLKXLEPPVDUHBY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.216
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 122.34 α = 90.00
b = 152.00 β = 113.21
c = 110.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-14
  • Released Date: 2011-12-21
  • Deposition author(s): Lee, B.-G., Kim, M.K., Song, H.K.

Revision History

  • Version 1_0: 2011-12-21

    Type: Initial release

  • Version 1_1: 2013-06-26

    Type: Database references

  • Version 1_2: 2017-11-08

    Type: Refinement description