3QBU

Crystal structure of putative peptidoglycan deactelyase (HP0310) from Helicobacter pylori


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 3QBU

Classification: HYDROLASE

Total Structure Weight: 150528.95

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein A, B, C, D 326 Helicobacter pylori EC#: 3.5.1 IUBMB
Gene Name(s): pgdA HPG27_289
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.204
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 154.56 α = 90.00
b = 154.73 β = 90.00
c = 158.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-14
  • Released Date: 2011-05-25
  • Deposition author(s): Shaik, M.M., Cendron, L., Percudani, R., Zanotti, G.

Revision History

  • Version 1_0: 2011-05-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2013-11-20

    Type: Structure summary