3J5R

Reconstruction of TRPV1 ion channel in complex with capsaicin by single particle cryo-microscopy


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.2 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 3J5R

Classification: TRANSPORT PROTEIN

Total Structure Weight: 272968.63

Macromolecule Entities
Molecule Chains Length Organism Details
Transient receptor potential cation channel subfamily V member 1 A, B, C, D 598 Rattus norvegicus Fragment: SEE REMARK 999
Gene Name(s): Trpv1 Vr1 Vr1l
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Channels: Transient Receptor Potential (TRP)

Protein Name: TRPV1 transient receptor potential channel


Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
A, B, C, D L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.2 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-28
  • Released Date: 2013-12-04
  • Deposition author(s): Liao, M., Cao, E., Julius, D., Cheng, Y.

Revision History

  • Version 1_0: 2013-12-04

    Type: Initial release

  • Version 1_1: 2013-12-11

    Type: Database references

  • Version 1_2: 2013-12-18

    Type: Database references