3G8Q

A cytidine deaminase edits C-to-U in transfer RNAs in archaea


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 3G8Q

Classification: RNA BINDING PROTEIN

Total Structure Weight: 123054.23

Macromolecule Entities
Molecule Chains Length Organism Details
Predicted RNA-binding protein, contains THUMP domain A, B, C, D 278 Methanopyrus kandleri Gene Name(s): MK0935
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.202
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 184.46 α = 90.00
b = 77.06 β = 103.57
c = 109.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-12
  • Released Date: 2009-05-26
  • Deposition author(s): Xiong, Y., Stanley, B.J.

Revision History

  • 2011-07-13
    Type: Version format compliance