2YFK

Crystal structure of a putative transcarbamoylase from Enterococcus faecalis

• PDB DOI: https://doi.org/10.2210/pdb2YFK/pdb

• Classification: TRANSFERASE
• Organism(s): Enterococcus faecalis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-04-06 Released: 2012-05-02 
• Deposition Author(s): Polo, L.M., Fita, I., Rubio, V.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 0.202 
• R-Value Work: 0.169 
• R-Value Observed: 0.171 

Literature

Crystal Structure of a Putative Transcarbamoylase from Enterococcus Faecalis with Carbamoyl Phosphate

Polo, L.M., Rubio, V.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 94.52 kDa 
• Atom Count: 6,056 
• Modelled Residue Count: 771 
• Deposited Residue Count: 836 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ASPARTATE/ORNITHINE CARBAMOYLTRANSFERASE	A, B	418	Enterococcus faecalis	Mutation(s): 0  EC: 2.1.3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 0.202 
• R-Value Work: 0.169 
• R-Value Observed: 0.171 
• Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.368	α = 90
b = 117.368	β = 90
c = 120.232	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-05-02 
Deposition Author(s): Polo, L.M., Fita, I., Rubio, V.

Revision History  

• Version 1.0: 2012-05-02
  Type: Initial release
  
• Version 1.1: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description