2PLM

Crystal structure of the protein TM0936 from Thermotoga maritima complexed with ZN and S-inosylhomocysteine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 2PLM

Classification: UNKNOWN FUNCTION

Total Structure Weight: 46275.16

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A 406 Thermotoga maritima EC#: 3.5.4.28 IUBMB 3.5.4.31 IUBMB
Gene Name(s): mtaD TM_0936
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIB
Query on SIB

A (2S)-2-AMINO-4-({[(2S,3S,4R,5R)-3,4-DIHYDROXY- 5-(6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)TETRAHYDROFURAN- 2-YL]METHYL}THIO)BUTANOIC ACID
C14 H19 N5 O6 S
VNPWVMVYUSNFAW-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.209
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 113.28 α = 90.00
b = 113.28 β = 90.00
c = 80.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-20
  • Released Date: 2007-07-17
  • Deposition author(s): Fedorov, A.A., Fedorov, E.V., Hermann, J.C., Marti-Arbona, R., Shoichet, B.K., Raushel, F.M., Almo, S.C.

Revision History

  • Version 1_0: 2007-07-17

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance