Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrates and mutations of critical residues
Golan, G., Zharkov, D.O., Grollman, A.P., Shoham, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endonuclease VIII | C [auth A] | 262 | Escherichia coli | Mutation(s): 1  Gene Names: nei EC: 3.2.2 (PDB Primary Data), 4.2.99.18 (PDB Primary Data) | |
UniProt | |||||
Find proteins for P50465 (Escherichia coli (strain K12)) Explore P50465  Go to UniProtKB:  P50465 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P50465 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3' | A [auth B] | 12 | N/A | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | B [auth C] | 12 | N/A | ||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | D [auth C], G [auth A], H [auth A], I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 73.556 | α = 90 |
b = 73.556 | β = 90 |
c = 170.113 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |