Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD
Inagaki, E., Ohshima, N., Sakamoto, K., Yokoyama, S., Tahirov, T.H.To be published.
Experimental Data Snapshot
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
1-pyrroline-5-carboxylate dehydrogenase | 516 | Thermus thermophilus HB8 | Mutation(s): 1  EC: 1.5.1.12 | ||
UniProt | |||||
Find proteins for Q5SI02 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SI02  Go to UniProtKB:  Q5SI02 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SI02 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
SER Query on SER | E [auth A], O [auth B] | SERINE C3 H7 N O3 MTCFGRXMJLQNBG-REOHCLBHSA-N | |||
ACT Query on ACT | C [auth A], M [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | D [auth A], N [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSO Query on CSO | A, B | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 102.04 | α = 90 |
b = 102.04 | β = 90 |
c = 279.352 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
BSS | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | phasing |