2BMV

APOFLAVODOXIN FROM HELICOBACTER PYLORI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 2BMV

Classification: ELECTRON TRANSPORT

Total Structure Weight: 17667.91

Macromolecule Entities
Molecule Chains Length Organism Details
FLAVODOXIN A 164 Helicobacter pylori Mutation: T78N, P117S
Gene Name(s): fldA HP_1161
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEN
Query on BEN

A BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BEN N/A in BindingDB
N/A in BindingMoad
Kd: 10000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.11 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.61 α = 90.00
b = 45.71 β = 90.00
c = 86.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-16
  • Released Date: 2006-06-22
  • Deposition author(s): Martinez-Julvez, M., Hermoso, J.A., Sancho, J., Perez-Dorado, I., Cremades, N., Bueno, M.

Revision History

  • Version 1_0: 2006-06-22

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance