2A1B

Carboxysome shell protein ccmK2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.346 
  • R-Value Work: 0.313 
  • R-Value Observed: 0.313 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Protein structures forming the shell of primitive bacterial organelles

Kerfeld, C.A.Sawaya, M.R.Tanaka, S.Nguyen, C.V.Phillips, M.Beeby, M.Yeates, T.O.

(2005) Science 309: 936-938

  • DOI: https://doi.org/10.1126/science.1113397
  • Primary Citation of Related Structures:  
    2A10, 2A18, 2A1B

  • PubMed Abstract: 

    Bacterial microcompartments are primitive organelles composed entirely of protein subunits. Genomic sequence databases reveal the widespread occurrence of microcompartments across diverse microbes. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. We report three-dimensional crystal structures of multiple carboxysome shell proteins, revealing a hexameric unit as the basic microcompartment building block and showing how these hexamers assemble to form flat facets of the polyhedral shell. The structures suggest how molecular transport across the shell may be controlled and how structural variations might govern the assembly and architecture of these subcellular compartments.


  • Organizational Affiliation

    Molecular Biology Institute, University of California, Los Angeles (UCLA), Box 951570, Los Angeles, CA 90095, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Carbon dioxide concentrating mechanism protein ccmK homolog 2
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
116Synechocystis sp. PCC 6803Mutation(s): 1 
Gene Names: ccmK2
UniProt
Find proteins for P72761 (Synechocystis sp. (strain PCC 6803 / Kazusa))
Explore P72761 
Go to UniProtKB:  P72761
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP72761
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.346 
  • R-Value Work: 0.313 
  • R-Value Observed: 0.313 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.744α = 90
b = 179.987β = 119.98
c = 69.769γ = 90
Software Package:
Software NamePurpose
CrystalCleardata collection
SCALEPACKdata scaling
PHASERphasing
CNSrefinement
CrystalCleardata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-08-09
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.3: 2021-10-20
    Changes: Database references
  • Version 1.4: 2023-08-23
    Changes: Data collection, Refinement description