2MT6

Solution structure of the human ubiquitin conjugating enzyme Ube2w


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 16000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Intrinsic disorder drives N-terminal ubiquitination by Ube2w.

Vittal, V.Shi, L.Wenzel, D.M.Scaglione, K.M.Duncan, E.D.Basrur, V.Elenitoba-Johnson, K.S.Baker, D.Paulson, H.L.Brzovic, P.S.Klevit, R.E.

(2015) Nat Chem Biol 11: 83-89

  • DOI: https://doi.org/10.1038/nchembio.1700
  • Primary Citation of Related Structures:  
    2MT6

  • PubMed Abstract: 

    Ubiquitination of the αN-terminus of protein substrates has been reported sporadically since the early 1980s. However, the identity of an enzyme responsible for this unique ubiquitin (Ub) modification has only recently been elucidated. We show the Ub-conjugating enzyme (E2) Ube2w uses a unique mechanism to facilitate the specific ubiquitination of the α-amino group of its substrates that involves recognition of backbone atoms of intrinsically disordered N termini. We present the NMR-based solution ensemble of full-length Ube2w that reveals a structural architecture unlike that of any other E2 in which its C terminus is partly disordered and flexible to accommodate variable substrate N termini. Flexibility of the substrate is critical for recognition by Ube2w, and either point mutations in or the removal of the flexible C terminus of Ube2w inhibits substrate binding and modification. Mechanistic insights reported here provide guiding principles for future efforts to define the N-terminal ubiquitome in cells.


  • Organizational Affiliation

    Department of Biochemistry, University of Washington, Seattle, Washington, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-conjugating enzyme E2 W151Homo sapiensMutation(s): 0 
Gene Names: UBE2WUBC16
EC: 6.3.2.19
UniProt & NIH Common Fund Data Resources
Find proteins for Q96B02 (Homo sapiens)
Explore Q96B02 
Go to UniProtKB:  Q96B02
PHAROS:  Q96B02
GTEx:  ENSG00000104343 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96B02
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 16000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-11-26
    Type: Initial release
  • Version 1.1: 2014-12-10
    Changes: Database references
  • Version 1.2: 2015-01-14
    Changes: Database references