244D

THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.176 
  • R-Value Observed: 0.124 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The high-resolution crystal structure of a parallel-stranded guanine tetraplex.

Laughlan, G.Murchie, A.I.Norman, D.G.Moore, M.H.Moody, P.C.Lilley, D.M.Luisi, B.

(1994) Science 265: 520-524

  • DOI: https://doi.org/10.1126/science.8036494
  • Primary Citation of Related Structures:  
    244D

  • PubMed Abstract: 

    Repeat tracts of guanine bases found in DNA and RNA can form tetraplex structures in the presence of a variety of monovalent cations. Evidence suggests that guanine tetraplexes assume important functions within chromosomal telomeres, immunoglobulin switch regions, and the human immunodeficiency virus genome. The structure of a parallel-stranded tetraplex formed by the hexanucleotide d(TG4T) and stabilized by sodium cations was determined by x-ray crystallography to 1.2 angstroms resolution. Sharply resolved sodium cations were found between and within planes of hydrogen-bonded guanine quartets, and an ordered groove hydration was observed. Distinct intra- and intermolecular stacking arrangements were adopted by the guanine quartets. Thymine bases were exclusively involved in making extensive lattice contacts.


  • Organizational Affiliation

    Medical Research Council Virology Unit, University of Glasgow, UK.


Macromolecules

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains LengthOrganismImage
DNA (5'-D(*TP*GP*GP*GP*GP*T)-3')
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
6N/A
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download Ideal Coordinates CCD File 
GA [auth L]
KA [auth M]
LA [auth N]
MA [auth P]
T [auth A]
GA [auth L],
KA [auth M],
LA [auth N],
MA [auth P],
T [auth A],
U [auth A],
W [auth B],
X [auth C],
Y [auth D]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
AA [auth E]
BA [auth E]
CA [auth I]
DA [auth I]
EA [auth I]
AA [auth E],
BA [auth E],
CA [auth I],
DA [auth I],
EA [auth I],
FA [auth L],
HA [auth M],
IA [auth M],
JA [auth M],
Q [auth A],
R [auth A],
S [auth A],
V [auth B],
Z [auth E]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.176 
  • R-Value Observed: 0.124 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28.76α = 74.39
b = 35.47β = 77.64
c = 56.77γ = 89.73
Software Package:
Software NamePurpose
SHELX-93refinement
DENZOdata reduction
CCP4data reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-02-23
    Type: Initial release
  • Version 1.1: 2008-05-22
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-14
    Changes: Data collection, Database references, Derived calculations