1RV6

Crystal Structure of PlGF in Complex with Domain 2 of VEGFR1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1RV6

Classification: HORMONE / GROWTH FACTOR / RECEPTOR

Total Structure Weight: 46403.45

Macromolecule Entities
Molecule Chains Length Organism Details
placenta growth factor (PlGF) V, W 101 Homo sapiens Fragment: Receptor binding domain
Gene Name(s): PGF Gene View PGFL PLGF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FLT1 protein X, Y 100 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: domain-2
Gene Name(s): FLT1 Gene View FLT FRT VEGFR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B3P
Query on B3P

W 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3- DIOL
C11 H26 N2 O6
HHKZCCWKTZRCCL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.194
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 54.28 α = 90.00
b = 71.98 β = 90.00
c = 115.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-12
  • Released Date: 2004-01-20
  • Deposition author(s): Christinger, H.W., Fuh, G., de Vos, A.M., Wiesmann, C.

Revision History

  • Version 1_0: 2004-01-20

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance