1ZOM

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with a peptidomimetic Inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1ZOM

Classification: HYDROLASE

Total Structure Weight: 27574.13

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor XI A 238 Homo sapiens EC#: 3.4.21.27 IUBMB
Fragment: Catalytic Domain
Mutation: S75A, K78A, T115A, C123S
Gene Name(s): F11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
339
Query on 339

A (S)-2-(3-((R)-1-(4-BROMOPHENYL)ETHYL)UREIDO)- N-((S)-1-((S)-5-GUANIDINO-1-OXO-1-(THIAZOL- 2-YL)PENTAN-2-YLAMINO)-3-METHYL-1-OXOBUTAN- 2-YL)-5-UREIDOPENTANAMIDE
C29 H45 Br N10 O5 S
HWZOXFNZLMNLSU-MNAPGUCWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
339 N/A in BindingDB
N/A in BindingMoad
IC50: 30 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.207
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 120.93 α = 90.00
b = 120.93 β = 90.00
c = 120.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-13
  • Released Date: 2006-05-23
  • Deposition author(s): Lin, J., Deng, H., Jin, L., Pandey, P., Rynkiewicz, M., Bibbins, F., Cantin, S., Quinn, J., Magee, S., Gorga, J.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance