1ZML

Crystal Structure of the Catalytic Domain of Factor XI in complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenethyl)guanidine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 1ZML

Classification: TRANSFERASE

Total Structure Weight: 27652.87

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor XI A 238 Homo sapiens EC#: 3.4.21.27 IUBMB
Fragment: Catalytic Domain
Mutation: S75A, K78A, T115A, C123S
Gene Name(s): F11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
412
Query on 412

A (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN- 2-YL)PHENETHYL)GUANIDINE
C12 H18 B N3 O3
ZYCNKSJMJFKCBX-LLVKDONJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCT
Query on BCT

A BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.203
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 121.29 α = 90.00
b = 121.29 β = 90.00
c = 121.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-10
  • Released Date: 2006-05-09
  • Deposition author(s): Lazarova, T.I., Jin, L., Rynkiewicz, M.J., Gorga, J.C., Bibbins, F., Meyers, H.V., Babine, R.E., Strickler, J.E.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance