1ZLR

Factor XI catalytic domain complexed with 2-guanidino-1-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)ethyl nicotinate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1ZLR

Classification: HYDROLASE

Total Structure Weight: 27417.71

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor XI A 237 Homo sapiens EC#: 3.4.21.27 IUBMB
Fragment: catalytic domain
Mutation: S75A, K78A, T115A, C123S
Gene Name(s): F11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
368
Query on 368

A (1R)-2-{[AMINO(IMINO)METHYL]AMINO}-1-{4-[(4R)- 4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL]PHENYL}ETHYL NICOTINATE
C18 H21 B N4 O5
HGLWHYRZHMOCMC-CVEARBPZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.190
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 121.00 α = 90.00
b = 121.00 β = 90.00
c = 121.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-09
  • Released Date: 2006-05-09
  • Deposition author(s): Lazarova, T.I., Jin, L., Rynkiewicz, M., Gorga, J.C., Bibbins, F., Meyers, H.V., Babine, R., Strickler, J.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance