1FMD

THE STRUCTURE AND ANTIGENICITY OF A TYPE C FOOT-AND-MOUTH DISEASE VIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 

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This is version 1.3 of the entry. See complete history


Literature

The structure and antigenicity of a type C foot-and-mouth disease virus.

Lea, S.Hernandez, J.Blakemore, W.Brocchi, E.Curry, S.Domingo, E.Fry, E.Abu-Ghazaleh, R.King, A.Newman, J.Stuart, D.Mateu, M.G.

(1994) Structure 2: 123-139

  • DOI: https://doi.org/10.1016/s0969-2126(00)00014-9
  • Primary Citation of Related Structures:  
    1FMD

  • PubMed Abstract: 

    Picornaviruses are responsible for a wide range of mammalian diseases and, in common with other RNA viruses, show considerable antigenic variation. Foot-and-mouth disease viruses (FMDVs) constitute one genus of the picornavirus family and are classified into seven serotypes, each of which shows considerable intratypic variation. This antigenic variation leads to continuing difficulties in controlling the disease. To date the structure of only one serotype, O, has been reported. The three-dimensional structure of a serotype C (isolate C-S8c1) FMDV, has been determined crystallographically at 3.5 A resolution. The main chain conformation of the virion is very similar to that of type O1 virus. The immunodominant G-H loop of VP1, the presumed site of cell attachment, is disordered in both types of virus indicating a functional role for flexibility of this region. There are significant changes in the structure of other antigenic loops and in some internal regions involved in protomer-protomer contacts, including the entire amino-terminal portion of VP2, described here for the first time for a picornavirus. Antigenic sites have been identified by genetic and peptide mapping methods, and located on the capsid. The data reveal a major new discontinuous antigenic site (site D) which is located near to the three-fold axis and involves residues of VP1, VP2 and VP3 which lie adjacent to each other on the capsid. In FMDV type C, amino acid substitutions seen in mutants that are resistant to neutralization by monoclonal antibodies (MAbs) map to predominantly surface-oriented residues with solvent-accessible side-chains not involved in interactions with other amino acids, whereas residues which are accessible but not substituted are found to be more frequently involved in protein-protein interactions. This provides a molecular interpretation for the repeated isolation of the same amino acid substitutions in MAb-resistant variants, an observation frequently made with RNA viruses. This first comparison of two FMDV serotypes shows how subtle changes at antigenic sites are sufficient to cause large changes in antigenic specificity between serotypes.


  • Organizational Affiliation

    Lab. of Molecular Biophysics, University of Oxford, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)A [auth 1]208Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for Q65095 (Foot-and-mouth disease virus)
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Go to UniProtKB:  Q65095
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UniProt GroupQ65095
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)B [auth 2]218Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for P15072 (Foot-and-mouth disease virus (isolate -/Germany/C1Oberbayen/1960 serotype C))
Explore P15072 
Go to UniProtKB:  P15072
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3)C [auth 3]219Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for P15072 (Foot-and-mouth disease virus (isolate -/Germany/C1Oberbayen/1960 serotype C))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)D [auth 4]85Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for P49303 (Foot-and-mouth disease virus (isolate -/Azerbaijan/A22-550/1965 serotype A))
Explore P49303 
Go to UniProtKB:  P49303
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 347.6α = 90
b = 347.6β = 90
c = 347.6γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-08-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-07
    Changes: Data collection, Database references, Derived calculations, Other